All you really need to augment is hacking, stealth in hacking, CASIE mod, arm strength, equipment space and the multiple take down mod. The icarus landing system is nice, and I always get it, but it's because falling is sometimes quicker then walking or climbing. There is one part in the TYM building where stealth helps(server room access), but I solved it by throwing gas canisters in the general direction and knocking everyone out.
All the weapons you need are the 10 mil, Revolver and gun turret. 10 mil with silencer can take care of pretty much anything in your way. Revolver with grenade bullets is for anything else. It's good for one-shot-ing packed groups of mooks or two-shot-ing heavies. Hacking plus arm strength means you can carry the turret around. I cleared the Omega Ranch by basically carting about one turret and letting it do all my killing. I was even able to get it into the boss fight with Namir and it was a small nuisance for him that gave me a bit of breathing space. (He took cover behind a wall and I lasered with to death) I'm kinda sad the rifle and machine pistol are so underpowered. Even the homing mod doesn't make them all that effective.
All the extra equipment space is for carrying in out weapons and ammo to sell.
I hack everything in sight. Including alarm panels. I have 30+ stop and 40+ nukes. It's kinda funny how if you have better hacking augs, stop and nuke just about rain from the sky, but are no longer needed as much.
Still lots of fun though. If I ever do a no kill run, that might be hard. But fun. Finally an excuse to carry and use the Stun, tranq, and PEPS.