Sometimes help comes in the least likely of places... Because of all the feedback, I feel as though I should post an update. Anyhow between reading all the comments on here and talking to my roommate and hanging out with some of the people in the apartment building I decided to just go over and see her. She was happy to see me, but still seemed upset. All in all, no progress there.
Then Sunday night everything went downhill... way downhill... We got in a bit of an argument, but not like a normal argument, there was no yelling or screaming just a lot of silence and uncertainty. I decided we should break up, as she pretty much had suggested that was what she wanted, but then she started crying. Anyhow, she ended up staying the night, but things were still weird.
Monday evening she came over and we had dinner and she seemed to be in a much better mood, we talked a bit, she stayed the night and things seem back to normal.
I still think she's kind of upset though, but I've also learned it's not with me. It's almost like manic-depression, although not as extreme. Anyhow thanks for all the advice/support, this isn't really over yet, but writing all this out has been very stress relieving for me.
Edit:
That was odd I was writing this as you were writing your story, Digital. It sounds like I'm going through the same thing you were, I hope that my situation works out. Although to be honest, I never expected to be in any serious relationship during college, but here I am.