This is anything I felt the need to flag as special in my database (minus GH/RB bundles)
Systems
Sony Pocketstation Card Captor Sakura Limited Edition
Sony PSP Metal Gear Solid Peace Walker Big Boss Pack
Nintendo DS Lite Lime Green Bundle
Nintendo Gamecube Mobile Suit Gundam Char's Red Special Edition
Wonderswan TarePanda Limited Edition
Ace Combat 6 Ace Edge Flight Stick Bundle
Alan Wake Limited Edition
Aliens vs Predator Hunter Edition
Army of Two Special Edition (KR)
Assassin's Creed 2 Master Assassin Edition
Assassin's Creed Limited Edition
Bioshock Limitied Edition
Bioshock 2 Limited Edition
Call of Duty 4: Modern Warfare 2 Prestige Edition
Dead Space Ultra Limited Edition
Deathsmiles Limited Edition
Devil May Cry 4 Collector's Edition
DJ Hero Renegade Edition
Enchanted Arms Limited Edition - sealed
Fable 2 Limited Edition
Fallout 3 Survival Edition
Forza 3 Limited Edition
Gears of War 2 Limited Edition
Gears of War Limited Edition
Grand Theft Auto IV Collector's Edition
Halo 3 Legendary Edition
Lost Planet Limited Edition
Mass Effect 2 Collector's Edition
Mass Effect Limited Edition
Oblivion: The Elder Scrolls IV Limited Edition
Perfect Dark Zero Limited Edition
Perfect Dark Zero Limited Edition - sealed
Prey Limited Edition
Prince of Persia 360 Limited Edition
Quantum of Solace 007 BB shirt bundle
Raiden IV LE
Record of Agarest War Naughty Edition
Resident Evil 5 Collector's Edition
Saints Row 2 Limited Edition
Soulcalibur IV Premium Edition
Splinter Cell Conviction LE
Splinter Cell Double Agent LE
Tales of Vesperia Special Edition
Tekken 6 Limited Edition Fight Stick Bundle
Viva Pinata Limited Edition
Dance Dance Revolution Mario Mix Pad Bundle - sealed
Donkey Konga 2 Bongo Bundle - sealed
Odama microphone bundle - sealed
Pokemon Box Ruby and Sapphire cable and memory card bundle
Robotech Battlecry Limited Edition
Dreamcast
Card Captor Sakura: Tomoyo no Video LE (JP)
De La Jet Set Radio Limited Edition (JP)
Episode of the Clovers Limited Edition (JP)
Last Hope Limited Edition (JP)
Sakura Taisen Limited Edition (JP)
Segagaga Segadirect Limited Edition (JP)
Step of Spring Limited Edition (JP)
Tokyo Bus Guide with Bijin Bus Guide (JP)
Trigger Heart Exelica Limited Edition (JP) - sealed
Arkanoid DS dial bundle (JP)
Atelier Annie Premium Box
Daigasso! Band Brothers LE (JP) - for sale!
Dokidoki Majo Shinpan! 2 DUO - First Print LE (JP)
Dark Spire, The - sealed
Juushinden: Ultimate Beast Battlers (JP)
Luminous Arc 2
Nanatsuiro * Drops [Limited Edition] (JP)
Oshare Majo Love and Berry (JP)
Gyakuten Saiban 4 Limited Edition (Apollo Justice: Ace Attorney) (JP)
Pinky Street Kira Kira * Music Night LE (JP)
Pokemon SoulSilver Bonus Edition
Shin Lucky Star DX Box (JP)
Shin Megami Tensei Strange Journey LE
Slide Adventure: Mag Kid (JP)
Spectrobes Collectors Edition
Super Robot Taisen OG Saga Endless Frontier
Tetsudou Musume DS LE (JP)
Wario Ware Twisted bundle
Civilization Chronicles
DJ Max Trilogy Pulsar Limited Edition
Guild Wars Nightfall Collector's Edition
Oblivion: The Elder Scrolls IV Limited Edition
Painkiller Black Limited Edition
Prey Limited Edition - sealed
Söldner-X: Himmelsstürmer LE
Starcraft 2 WoL Collector's Edition
Spore Galactic Edition
.hack//G.U. vol.1//Rebirth Special Edition
Ar Tonelico Limited Edition
Ar Tonelico 2 Limited Edition
Beatmania Pad Bundle
Dragon Quest 8
Eye Toy: Kinetic Camera
Final Fantasy XII Collector's Edition
Getting Up Limited Edition
Grand Theft Auto San Andreas Special Edition
Growlanser: Generations Deluxe Pack
Growlanser: Heritage of War
Gungrave Limited Edition (JP)
Lucky Star DX Box (JP)
Magna Carta Deluxe Box
Mana Khemia 2 Rosenqueen LE - sealed
Mana Khemia Limited Edition
Metal Gear Solid 3: Subsistence Limited Edition
Metal Gear Solid The Essential Collection - sealed
Metal Gear Solid Twentieth Anniv. Collection (JP)
Popolocrois Hajimari no Bouken Limited Edition (JP)
Resident Evil 4 Premium Edition
Sakura Wars So Long My Love LE
Sega Rally 2006 First Print Limited Edition (JP)
Shikigami no Shiro Limited Edition (JP)
Shin Megami Tensei: Devil Summoner 2
Shin Megami Tensei: Digital Devil Saga I+II
Shin Megami Tensei: Persona 3 Limited Edition
Taiko Drum Master Drum bundle x 2
Tekken 5 Ultimate Collector's Edition
Time Crisis 3 /w Dual Guncons
Wild Arms 5 LE First Print
Yanya Cabalista: City Skater box
Zone of the Enders Premium Edition (JP)
BlazBlue First Print LE
Brothers in Arms Hell's Highway LE
Demon's Souls Deluxe Edition
End War Limited Edition, Tom Clancy's
Eye of Judgement Camera Bundle
God of War 3 Pandora's Box LE
Heavy Rain Limited Edition (UK)
Metal Gear Solid 4: Guns of the Patriots SE
Resistance 2: Collector's Edition
Street Fighter IV Collector's Edition
Warhawk Headset Bundle
DJ Max Fever The Crew Limited Edition - game signed/sealed
DJ Max Portable 2 Limited Edition Silver
DJ Max Portable Black Square Quattra LE
DJ Max Portable Hot Tunes Limited Edition
DJ Max Portable Metro Combo Package
Lunar Silver Star Harmony Limited Edition
Magical Lyrical Girl Nanoha Battle of the Aces LE (JP)
Metal Gear Solid Peace Walker Limited Edition - sealed
Prinny: Can I Really Be The Hero?
Shin Megami Tensei: Persona PSP LE
PSX
Arc The Lad Complete
Front Mission 3 Limited Editon (JP)
Lunar 2 Eternal Blue Complete
Metal Gear Solid Premium Edition (JP)
Saturn
Cyberbots Limited Edition (JP)
Gungriffon II Saturn Link Edition (JP)
Animal Crossing City Folk Wii Speak Bundle
Cursed Mountain Limited Edition - sealed
Metroid Prime Trilogy
Monster Hunter Tri Pro Controller Bundle
WonderSwan
Beatmania for Wonderswan Scratch bundle (JP)
Bistro Cupid Limited Edition (JP)
Dead or Alive Ultimate
Doom 3 Special Edition
Godfather Limited Edition
Halo 2 Limited Collector's Edition
Halo Triple Pack
Jade Empire Limited Edition
Mechassault 2 Lone Wolf Limited Edition
NUDE -Natural Ultimate Digital Experiment- headset bundle (JP)
Shin Megami Tensei 9 Limited Edition (JP)
Steel Battalion Controller bundle
misc favorites
Bioshock Art Book
Castlevania Portrait of Ruin Bonus Kit
DJ Max Technika 2 Signature Edition OST
Dragon Quest Slime Controller
Eternal Sonata faceplate collection
Fallout 3 Preorder Bottle Opener
Gears of War 2 Amazon.com scale replica lancer
Gran Turismo 4 2004 Toyota Prius Demo
Halo 3 Media Kit
Metal Gear Saga 1 + 2
Metal Gear Solid Peace Walker Tokyo Game Show Press Guide
NEO*GEO World Heroes Laser Disc Collection
Onimusha Soul Controller
Scribblenauts Rooster Hat
Sega Tokyo Game Show 2009 Press Guide
Steambot Chronicles Harmonica
Viewtiful Joe Bobblehead
World of Disgaea Artbook 1+2