To replicate the bug:
On a new save, while playing Fugitive chapter, get caught... When you're in the next chapter, go to the main menu and select Fugitive chapter again. Play it with SAVE on, this time don't get caught. If you do that, you'll get both Hands Up! and Fugitive trophies respectively (if you don't already have them). Now if you continue playing the game, you should see:
Fugitive
Jayden's Blue
Under Arrest
in the chapter menu... Continue and beat the game... If you select Jayden's Blue chapter and with SAVE on, the game is broken. Right after you play the piano, you're back in the ARI office to review clues/files. There's a new clue, the footage of Shaun's kidnapping, if you analyze the footage (which you need to do to progress), no new information... All of clues are broken (can't analyze any of them). You're suppose to have the clue about Mad Jack, but since it's broken, you're stuck in ARI forever...
between now, replaying the chapter before it will not work (getting arrested or ran away result in the same glitch).
I was on my way to earn the Perfect Crime trophy, but i can't continue

( So, i had to start a new save.